Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6928933 chr6:133116073 G/A 1.11E-16 496 31.47 35.2 29.05 KM Plot
THCA rs6930703 chr6:133111266 C/T 1.99E-6 498 31.43 35.6 29.05 KM Plot
THCA rs6934155 chr6:133124021 C/T 0 501 31.45 35.2 29.05 KM Plot
THCA rs6934190 chr6:133116664 G/A 1.11E-16 497 31.45 35.2 29.05 KM Plot
THCA rs6942544 chr7:43971220 G/C 3.6E-8 496 31.02 33.58 32.37 KM Plot
THCA rs695717 chr22:43768812 G/C 2.71E-7 486 35.53 31.23 31.6 KM Plot
THCA rs6969334 chr7:44331821 T/C 1.46E-5 499 31.83 30.07 18.43 KM Plot
THCA rs6970279 chr7:94014889 A/C 5.06E-6 503 24.42 31.7 31.93 KM Plot
THCA rs6983865 chr8:5031146 A/G 0 498 31.47 36.9 7.35 KM Plot
THCA rs6994177 chr8:58083801 G/C 4.15E-6 501 31.03 38.17 32.9 KM Plot
THCA rs7000771 chr8:5000802 A/G 2.28E-5 503 28.1 25.95 31.67 KM Plot
THCA rs7010204 chr8:5035868 A/C 0 497 31.47 34.1 5.8 KM Plot
THCA rs7013633 chr8:144571431 T/C 6.19E-7 492 31.7 30.92 21.93 KM Plot
THCA rs7015034 chr8:5051560 T/C 3.95E-5 499 31.47 36.83 5.8 KM Plot
THCA rs701826 chr10:90417499 G/T 2.75E-5 503 32.9 31.33 26.73 KM Plot